Generate features
Usage
generateFeatures(
CS,
channels,
featMethod = "summary",
n = 1000,
quantileDist = 0.1,
aggSlot = "auto",
aggSize = 10000,
cores = "auto",
recalculate = FALSE
)Arguments
- CS
CytoScan object
- channels
Channels to use for feature generation
- featMethod
Feature generation method to use
- n
Number of cells to use for feature generation (default = 1000)
- aggSlot
Whether to use reference or test data as aggregate (default = "auto")
- aggSize
How many cells to use in total for aggregate sample (default = 10000)
- cores
How many cores to use for parallelization
- recalculate
Whether to recalculate features for existing data